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| Chiamata di varianti a singola cellula× | Analisi delle Variazioni del Numero di Copie× | |
|---|---|---|
| Campo | Bioinformatica | Bioinformatica |
| Famiglia | Process / pipeline | Process / pipeline |
| Anno di origine≠ | 2016 (Monovar; foundational single-cell SNV calling) | 1998–2006 |
| Ideatore≠ | Hamim Zafar, Ken Chen, Nicholas Navin and colleagues | Pinkel et al. (array CGH); Redon et al. (genome-wide CNV map) |
| Tipo≠ | Computational genomics pipeline | Genomic structural variant detection pipeline |
| Fonte seminale≠ | Zafar, H., Wang, Y., Nakhleh, L., Navin, N., & Chen, K. (2016). Monovar: single-nucleotide variant detection in single cells. Nature Methods, 13(6), 505–507. DOI ↗ | Redon, R., Ishikawa, S., Fitch, K. R., et al. (2006). Global variation in copy number in the human genome. Nature, 444(7118), 444–454. DOI ↗ |
| Alias | scVariant calling, single-cell SNV calling, scDNA-seq variant detection, single-cell somatic mutation calling | CNV analysis, copy number variant detection, CNV calling, somatic copy number alteration analysis |
| Correlati≠ | 1 | 6 |
| Sintesi≠ | Single-cell variant calling is a bioinformatics pipeline that identifies DNA sequence variants — single-nucleotide variants (SNVs), small insertions and deletions, and copy-number alterations — within individual cells rather than across a bulk tissue mixture. By resolving the mutational landscape cell by cell, it reveals intra-tumoral heterogeneity, clonal architecture, and somatic mutation patterns that bulk sequencing obscures. The approach is central to cancer genomics, developmental biology, and any study where cell-to-cell genetic diversity is the primary question. | Copy number variation (CNV) analysis is a genomic pipeline for detecting regions where individuals carry fewer or more copies of a DNA segment than the reference genome. CNVs span kilobases to megabases and are a major class of structural variation implicated in cancer, neurodevelopmental disorders, and population diversity. The pipeline typically processes SNP array intensities or read-depth signals from whole-genome sequencing, applies segmentation algorithms, calls gain and loss events, and annotates them against gene and clinical databases. |
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