Process / pipelineBioinformatics / omics

Single-cell ChIP-seq Peak Calling — scChIP-seq Epigenomic Profiling

Single-cell ChIP-seq peak calling is a bioinformatics pipeline that identifies genomic regions enriched for histone modifications or transcription factor binding in individual cells. By profiling chromatin states at single-cell resolution, it reveals epigenomic heterogeneity hidden in bulk ChIP-seq experiments, enabling researchers to map regulatory landscapes across distinct cell populations within a complex tissue sample.

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Sources

  1. Grosselin, K., Durand, A., Marsolier, J., Poitou, A., Marangoni, E., Nemati, F., ... & Vallot, C. (2019). High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer. Nature Genetics, 51(6), 1060-1066. link
  2. Ku, W. L., Nakamura, K., Gao, W., Cui, K., Hu, G., Tang, Q., ... & Zhao, K. (2019). Single-cell chromatin immunocleavage sequencing (scChIC-seq) to profile histone modification. Nature Methods, 16(4), 323-325. link

Related methods

ScholarGateSingle-cell ChIP-seq peak calling (Single-cell Chromatin Immunoprecipitation Sequencing Peak Calling). Retrieved 2026-06-04 from https://scholargate.app/en/bioinformatics/single-cell-chip-seq-peak-calling