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Gọi biến thể Bayes×Căn chỉnh trình tự×
Lĩnh vựcTin sinh họcTin sinh học
HọProcess / pipelineProcess / pipeline
Năm ra đời2010 (GATK framework); Bayesian genotyping principles preceded by Samtools/MAQ ~2008–20091970 (global alignment); 1981 (local alignment)
Người khởi xướngMark DePristo, Eric Banks, and the Broad Institute GATK teamSaul B. Needleman & Christian D. Wunsch (global); Temple F. Smith & Michael S. Waterman (local)
LoạiProbabilistic genomic inference pipelineComputational sequence analysis technique
Công trình gốcMcKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., ... & DePristo, M. A. (2010). The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20(9), 1297–1303. DOI ↗Needleman, S. B., & Wunsch, C. D. (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. Journal of Molecular Biology, 48(3), 443–453. DOI ↗
Tên gọi khácBayesian genotyping, probabilistic variant calling, GATK HaplotypeCaller, Bayesian SNP/indel detectionpairwise alignment, multiple sequence alignment, MSA, sequence comparison
Liên quan66
Tóm tắtBayesian variant calling is a computational pipeline that uses probabilistic inference to identify single-nucleotide polymorphisms (SNPs), insertions, and deletions in a genome by treating sequencing data as evidence and computing posterior probabilities over candidate genotypes. Unlike deterministic threshold-based callers, Bayesian approaches explicitly model sequencing error, mapping uncertainty, and prior genotype frequencies to produce calibrated genotype likelihoods that can be used for downstream filtering and association testing.Sequence alignment is a foundational bioinformatics technique that arranges two or more DNA, RNA, or protein sequences to reveal regions of similarity, infer evolutionary relationships, identify functional domains, and map sequencing reads to reference genomes. It underpins virtually every downstream genomic analysis, from variant calling and gene expression quantification to phylogenetics and structural annotation.
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ScholarGateSo sánh phương pháp: Bayesian Variant Calling · Sequence Alignment. Truy cập ngày 2026-06-15 từ https://scholargate.app/vi/compare