Krahasoni metodat
Shqyrtoni metodat e zgjedhura krah për krah; rreshtat që ndryshojnë janë të theksuar.
| Sintetizim Transkriptomik De Novo× | Analiza e skriningut CRISPR× | |
|---|---|---|
| Fusha | Bioinformatikë | Bioinformatikë |
| Familja | Process / pipeline | Process / pipeline |
| Viti i origjinës≠ | 2011 | 2013 |
| Krijuesi≠ | Aviv Regev | Feng Zhang |
| Lloji≠ | Sequence assembly pipeline | High-throughput genetic screen pipeline |
| Burimi themelues≠ | Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., ... & Regev, A. (2011). Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology, 29(7), 644-652. DOI ↗ | Shalem, O., Sanjana, N. E., Hartenian, E., Shi, X., Scott, D. A., Mikkelsen, T. S., ... & Zhang, F. (2014). Genome-scale CRISPR-Cas9 knockout screening in human cells. Science, 343(6166), 84-87. DOI ↗ |
| Emërtime të tjera≠ | transcriptome assembly, de novo assembly, RNA-Seq assembly | CRISPR pooled screen, genetic screen analysis |
| Të lidhura | 3 | 3 |
| Përmbledhja≠ | De novo transcriptome assembly reconstructs full-length messenger RNA sequences directly from sequencing reads without requiring a reference genome. Pioneered by Regev, Haas, and colleagues, this pipeline enables transcript discovery in non-model organisms and detection of novel isoforms, fusion genes, and splice variants. | CRISPR screen analysis processes data from pooled genetic screens using CRISPR-Cas9 to identify genes required for cell growth, survival, or phenotype in specific conditions. Developed by Zhang, Sanjana, and others, this computational pipeline transforms sequencing readouts of guide RNA abundances into ranked lists of functional genes. |
| ScholarGateSeti i të dhënave ↗ |
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