Сравнение методов
Просматривайте выбранные методы рядом; строки с различиями подсвечены.
| Дифференциальный анализ обогащения путей× | Сетевой анализ обогащения путей× | |
|---|---|---|
| Область | Биоинформатика | Биоинформатика |
| Семейство | Process / pipeline | Process / pipeline |
| Год появления≠ | 2004–2012 | 2002 (seminal network-scoring concept); matured 2010–2015 |
| Автор метода≠ | Extended from Over-Representation Analysis (Draghici et al. 2003) and competitive gene-set testing (Smyth lab, ~2004–2012) | Ideker, Ozier, Schwikowski, and Siegel (network-based scoring); extended by Vaske et al. (PARADIGM) and others |
| Тип≠ | Comparative enrichment analysis | Pathway enrichment and network analysis method |
| Основополагающий источник≠ | Wu, D., & Smyth, G. K. (2012). Camera: a competitive gene set test accounting for inter-gene correlation. Nucleic Acids Research, 40(17), e133. DOI ↗ | Ideker, T., Ozier, O., Schwikowski, B., & Siegel, A. F. (2002). Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics, 18(suppl_1), S233–S240. link ↗ |
| Другие названия | differential enrichment analysis, comparative pathway enrichment, DPEA, cross-condition pathway analysis | network pathway enrichment, network-based enrichment, topology-based pathway analysis, NBPEA |
| Связанные≠ | 5 | 1 |
| Сводка≠ | Differential pathway enrichment analysis identifies biological pathways whose enrichment signals differ significantly between two or more experimental conditions — for example, between two diseases, two treatments, or two cell types. Rather than asking which pathways are enriched in one condition, it asks which pathways show a statistically meaningful change in enrichment level across conditions, revealing condition-specific or context-dependent biology. | Network-based pathway enrichment analysis integrates molecular interaction networks — protein-protein interactions, signalling graphs, or gene regulatory networks — with omics measurements to identify biological pathways that are coordinately altered in a condition. Unlike classical over-representation or gene-set enrichment approaches that treat pathway genes as independent lists, this family of methods propagates signals across network edges, capturing the topology of interactions and uncovering dysregulated modules that flat-list enrichment would miss. |
| ScholarGateНабор данных ↗ |
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