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एकल-कोशिका माइक्रोबायोम विविधता विश्लेषण×एकल-कोशिका प्रकार्य आह्वान×
क्षेत्रजैव सूचना विज्ञानजैव सूचना विज्ञान
परिवारProcess / pipelineProcess / pipeline
उद्भव वर्ष2019-20222016 (Monovar; foundational single-cell SNV calling)
प्रवर्तकPaul Blainey lab and Bhatt lab (pioneered microSPLiT and single-microbe genomics approaches)Hamim Zafar, Ken Chen, Nicholas Navin and colleagues
प्रकारComputational-experimental omics pipelineComputational genomics pipeline
मौलिक स्रोतKehe, J., Kulesa, A., Ortiz, A., Ackerman, C. M., Thakku, S. G., Sellers, D., Bhatt, S., ... & Blainey, P. C. (2019). Massively parallel screening of synthetic microbial communities. Proceedings of the National Academy of Sciences, 116(26), 12804-12809. link ↗Zafar, H., Wang, Y., Nakhleh, L., Navin, N., & Chen, K. (2016). Monovar: single-nucleotide variant detection in single cells. Nature Methods, 13(6), 505–507. DOI ↗
उपनामsc-microbiome analysis, single-cell microbial profiling, single-bacterium sequencing, microSPLiT analysisscVariant calling, single-cell SNV calling, scDNA-seq variant detection, single-cell somatic mutation calling
संबंधित31
सारांशSingle-cell microbiome diversity analysis resolves the composition and functional heterogeneity of microbial communities at the level of individual cells or bacteria. By combining single-cell or single-bacterium isolation with high-throughput sequencing, this pipeline overcomes the averaging effect of bulk metagenomics, enabling detection of rare strains, intra-species variation, and cell-to-cell heterogeneity within complex microbiomes such as the gut, oral cavity, or environmental samples.Single-cell variant calling is a bioinformatics pipeline that identifies DNA sequence variants — single-nucleotide variants (SNVs), small insertions and deletions, and copy-number alterations — within individual cells rather than across a bulk tissue mixture. By resolving the mutational landscape cell by cell, it reveals intra-tumoral heterogeneity, clonal architecture, and somatic mutation patterns that bulk sequencing obscures. The approach is central to cancer genomics, developmental biology, and any study where cell-to-cell genetic diversity is the primary question.
ScholarGateडेटासेट
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  3. PUBLISHED
  1. v1
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  3. PUBLISHED

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ScholarGateविधियों की तुलना करें: Single-cell Microbiome Diversity Analysis · Single-cell variant calling. 2026-06-18 को यहाँ से प्राप्त https://scholargate.app/hi/compare