Single-cell Sequence Alignment — scRNA-seq Read Mapping
Single-cell sequence alignment is the computational step that maps millions of short sequencing reads produced by single-cell RNA-seq experiments back to a reference genome or transcriptome. Unlike bulk RNA-seq alignment, each read carries a cell barcode and a Unique Molecular Identifier (UMI) that together identify the originating cell and the individual RNA molecule. Accurate alignment and barcode demultiplexing are prerequisites for constructing the cell-by-gene count matrix that drives all downstream single-cell analyses.
Прочетете целия метод
Влезте с безплатен профил, за да прочетете този раздел.
Method map
The neighbourhood of related methods — select a node to explore.
Източници
- Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013). STAR: ultrafast universal RNA-seq aligner. Bioinformatics, 29(1), 15–21. DOI: 10.1093/bioinformatics/bts635 ↗
- Smith, T., Heger, A., & Sudbery, I. (2017). UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy. Genome Research, 27(3), 491–499. DOI: 10.1101/gr.209601.116 ↗
Как да цитирате тази страница
ScholarGate. (2026, June 3). Single-cell RNA-seq Sequence Alignment. ScholarGate. https://scholargate.app/bg/bioinformatics/single-cell-sequence-alignment
Which method?
Set this method beside its closest kin and read them side by side — the library lays the books on the table; the choice is yours.
- RNA-seq анализ на диференциална експресияБиоинформатика↔ compare
Цитиран в
Забелязахте ли проблем на тази страница? Съобщете или предложете поправка →