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Single-cell sequence alignment/Ushahidi
Rekodi ya ushahidi wa mbinu

Single-cell sequence alignment

Single-cell sequence alignment is the computational step that maps millions of short sequencing reads produced by single-cell RNA-seq experiments back to a reference genome or transcriptome. Unlike bulk RNA-seq alignment, each read carries a cell barcode and a Unique Molecular Identifier (UMI) that together identify the originating cell and the individual RNA molecule. Accurate alignment and barcode demultiplexing are prerequisites for constructing the cell-by-gene count matrix that drives all downstream single-cell analyses.

Sources recorded, not reviewed

Rekodi ya chanzo

Nukuu zimehamishwa kwa uhalisi kutoka kwa rekodi ya chanzo cha mbinu. Hakuna uthibitisho wa kiwango cha dai unaodokezwa kutoka kwao.

Single-cell RNA-seq Sequence Alignment
Rekodi ya mbinu ya kiajenda · process-pipeline / bioinformatics
  • Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013). STAR: ultrafast universal RNA-seq aligner. Bioinformatics, 29(1), 15–21. · DOI 10.1093/bioinformatics/bts635
  • Smith, T., Heger, A., & Sudbery, I. (2017). UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy. Genome Research, 27(3), 491–499. · DOI 10.1101/gr.209601.116
Fungua mbinu kamili

Madai yaliyotunzwa

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Mbinu zinazohusiana

Zilizotengenezwa kutoka kwa grafu ya mbinu na kuonyeshwa kama uhusiano uliopendekezwa na mashine — hakuna dai la ushahidi linalodokezwa.

Taxonomic bucketRNA-seq Differential Expressionmachine-suggested · Relational suggestion, not evidence.

Hali ya ushahidi

Sources recorded, not reviewed

Bibliographic sources are present. Claim-level evidence review has not been performed.

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2 nukuu zilizorekodiwa, ziliyonakiliwa kutoka kwa rekodi ya chanzo cha mbinu.

Vitendo

Fungua ukurasa wa mbinu
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