Krahasoni metodat

	Analiza e asociacionit gjenetik specifik për tipin qelizor GWAS me një qelizë	Analiza e shprehjes diferenciale të RNA-seq
Fusha	Bioinformatikë	Bioinformatikë
Familja	Process / pipeline	Process / pipeline
Viti i origjinës	2019–2022 (rapid emergence with large-scale scRNA-seq atlases)	2008–2010 (RNA-seq DE methodology established)
Krijuesi	Multiple groups (Price lab, De Jager lab, others); scDRS framework by Zhang et al. 2022	Multiple groups; foundational methods from Anders & Huber (DESeq, 2010), Robinson, McCarthy & Smyth (edgeR, 2010)
Lloji	Integrative genomic analysis pipeline	Quantitative genomics pipeline
Burimi themelues	Zhang, M. J., Hou, K., Dey, K. K., Sakaue, S., Jagadeesh, K. A., Weinand, K., ... & Price, A. L. (2022). Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data. Nature Genetics, 54(8), 1224-1234.	Love, M. I., Huber, W., & Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15(12), 550.
Emërtime të tjera	sc-GWAS, single-cell GWAS integration, cell-type-specific GWAS, single-cell genetic association analysis	RNA-seq DE analysis, transcriptomic differential expression, bulk RNA-seq DE, DEA
Të lidhura	6	6
Përmbledhja	Single-cell GWAS is an integrative bioinformatics pipeline that maps genome-wide association study (GWAS) signals onto single-cell transcriptomic landscapes to identify which cell types and individual cells carry disproportionate genetic risk for a disease or trait. By leveraging single-cell RNA-seq atlases alongside GWAS summary statistics, it moves beyond tissue-level associations to reveal the precise cellular contexts in which disease-associated genetic variants exert their effects.	RNA-seq differential expression (DE) analysis identifies genes whose transcript abundance differs significantly between two or more biological conditions — for example, treated versus control, or diseased versus healthy tissue. Starting from raw sequencing reads, the pipeline moves through alignment, count-based normalization, statistical modeling of count dispersion, hypothesis testing, and multiple-testing correction to produce a ranked list of differentially expressed genes accompanied by fold-change estimates and adjusted p-values.