Machine learning-assisted phylogenetic analysis
Machine learning-assisted phylogenetic analysis integrates supervised, unsupervised, or deep learning models into the evolutionary tree inference workflow to improve speed, accuracy, or scalability beyond what classical maximum-likelihood and Bayesian methods achieve alone. Applications range from substitution model selection and tree topology prediction to placement of novel sequences onto existing reference trees and detection of recombination or horizontal gene transfer events.
Rekod sumber
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- Nesterenko, L., et al. (2024). Machine learning methods in phylogenetics: A review of applications and perspectives. Briefings in Bioinformatics, 25(1), bbad441. · URL
- Suvorov, A., Hochuli, J., & Schrider, D. R. (2020). Accurate inference of tree topologies from multiple sequence alignments using deep learning. Systematic Biology, 69(2), 221–233. · URL
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