Time-series eQTL analysis

Time-series eQTL analysis identifies genetic variants (eQTLs) whose effect on gene expression changes over time or across developmental stages. By combining longitudinal RNA-seq data with individual genotypes, the method captures how the same SNP can activate, silence, or reshape gene regulation at different time points — revealing the temporal architecture of the genome's regulatory program in processes such as differentiation, disease progression, and environmental response.