Differential proteomics analysis
Differential proteomics analysis is a quantitative pipeline that identifies proteins whose abundance levels change significantly between two or more biological conditions — such as healthy versus diseased tissue, treated versus untreated cells, or different developmental stages. By combining mass spectrometry-based detection with statistical testing, the method generates ranked lists of differentially expressed proteins that can be linked to biological pathways, disease mechanisms, or drug targets.
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- Ong, S.-E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., & Mann, M. (2002). Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Molecular & Cellular Proteomics, 1(5), 376–386. · DOI 10.1074/mcp.M200025-MCP200
- Bantscheff, M., Lemeer, S., Savitski, M. M., & Kuster, B. (2012). Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present. Analytical and Bioanalytical Chemistry, 404(4), 939–965. · DOI 10.1007/s00216-012-6203-4
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